J3_9BUP_019
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9BUP|1|AA|C|3099, 9BUP|1|AA|U|3156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_019 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.067
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9BUP|1|AA|G|2990
9BUP|1|AA|U|2991
9BUP|1|AA|C|2992
*
9BUP|1|AA|G|3093
9BUP|1|AA|C|3094
9BUP|1|AA|C|3095
9BUP|1|AA|U|3096
9BUP|1|AA|A|3097
9BUP|1|AA|U|3098
9BUP|1|AA|C|3099
9BUP|1|AA|G|3100
9BUP|1|AA|A|3101
9BUP|1|AA|U|3102
9BUP|1|AA|C|3103
9BUP|1|AA|C|3104
*
9BUP|1|AA|G|3152
9BUP|1|AA|G|3153
9BUP|1|AA|U|3154
9BUP|1|AA|G|3155
9BUP|1|AA|U|3156
9BUP|1|AA|C|3157
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AO
- 60S ribosomal protein L27a
- Chain AS
- 60S ribosomal protein L18-2
- Chain AV
- 60S ribosomal protein L21
- Chain Ai
- Large ribosomal subunit protein eL42
- Chain S7
- Transfer RNA; tRNA
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