J3_9BUP_020
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUC*GAC*GAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9BUP|1|AA|A|3042, 9BUP|1|AA|A|3044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_020 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0622
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BUP|1|AA|C|3003
9BUP|1|AA|U|3004
9BUP|1|AA|C|3005
*
9BUP|1|AA|G|3029
9BUP|1|AA|A|3030
9BUP|1|AA|C|3031
*
9BUP|1|AA|G|3040
9BUP|1|AA|A|3041
9BUP|1|AA|A|3042
9BUP|1|AA|A|3043
9BUP|1|AA|A|3044
9BUP|1|AA|G|3045
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- 60S ribosomal protein L11a
- Chain AR
- 60S ribosomal protein L5
- Chain AV
- 60S ribosomal protein L21
- Chain S8
- Transfer RNA; tRNA
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