J3_9BUP_022
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAAAG*CUAUCAC*GCAAUAGUUCUUUAA
- Length
- 28 nucleotides
- Bulged bases
- 9BUP|1|AA|U|3624, 9BUP|1|AA|C|3625, 9BUP|1|AA|U|3662, 9BUP|1|AA|A|3663, 9BUP|1|AA|G|3664, 9BUP|1|AA|U|3665, 9BUP|1|AA|U|3669, 9BUP|1|AA|A|3671
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|U|3575
9BUP|1|AA|A|3576
9BUP|1|AA|A|3577
9BUP|1|AA|A|3578
9BUP|1|AA|A|3579
9BUP|1|AA|G|3580
*
9BUP|1|AA|C|3621
9BUP|1|AA|U|3622
9BUP|1|AA|A|3623
9BUP|1|AA|U|3624
9BUP|1|AA|C|3625
9BUP|1|AA|A|3626
9BUP|1|AA|C|3627
*
9BUP|1|AA|G|3658
9BUP|1|AA|C|3659
9BUP|1|AA|A|3660
9BUP|1|AA|A|3661
9BUP|1|AA|U|3662
9BUP|1|AA|A|3663
9BUP|1|AA|G|3664
9BUP|1|AA|U|3665
9BUP|1|AA|U|3666
9BUP|1|AA|C|3667
9BUP|1|AA|U|3668
9BUP|1|AA|U|3669
9BUP|1|AA|U|3670
9BUP|1|AA|A|3671
9BUP|1|AA|A|3672
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A9
- 60S ribosomal protein L35ae
- Chain AI
- 60S ribosomal protein L6
- Chain AK
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L14
- Chain AW
- 60S ribosomal protein L17
Coloring options: