J3_9BUP_023

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAA*UUUG*UAAAG

Length

12 nucleotides

Bulged bases

9BUP|1|AA|U|3711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|C|3691
9BUP|1|AA|A|3692
9BUP|1|AA|A|3693
*
9BUP|1|AA|U|3709
9BUP|1|AA|U|3710
9BUP|1|AA|U|3711
9BUP|1|AA|G|3712
*
9BUP|1|AA|U|3779
9BUP|1|AA|A|3780
9BUP|1|AA|A|3781
9BUP|1|AA|A|3782
9BUP|1|AA|G|3783

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3

Chain AW

60S ribosomal protein L17