J3_9BUP_025
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GAUACGC*GAAUG
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|AC|U|64, 9BUP|1|AC|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_025 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1917
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BUP|1|AC|C|48
9BUP|1|AC|C|49
*
9BUP|1|AC|G|62
9BUP|1|AC|A|63
9BUP|1|AC|U|64
9BUP|1|AC|A|65
9BUP|1|AC|C|66
9BUP|1|AC|G|67
9BUP|1|AC|C|68
*
9BUP|1|AC|G|99
9BUP|1|AC|A|100
9BUP|1|AC|A|101
9BUP|1|AC|U|102
9BUP|1|AC|G|103
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L23
- Chain Ac
- Ribosomal protein L37
- Chain Ae
- 60S ribosomal protein L39
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