J3_9BUP_027
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUUAAG*CGCGUAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9BUP|1|SA|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_027 not in the Motif Atlas
- Homologous match to J3_8CRE_072
- Geometric discrepancy: 0.0551
- The information below is about J3_8CRE_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|A|41
9BUP|1|SA|G|42
9BUP|1|SA|A|43
9BUP|1|SA|U|44
9BUP|1|SA|U|45
9BUP|1|SA|A|46
9BUP|1|SA|A|47
9BUP|1|SA|G|48
*
9BUP|1|SA|C|437
9BUP|1|SA|G|438
9BUP|1|SA|C|439
9BUP|1|SA|G|440
9BUP|1|SA|U|441
9BUP|1|SA|A|442
9BUP|1|SA|A|443
9BUP|1|SA|A|444
9BUP|1|SA|U|445
*
9BUP|1|SA|A|470
9BUP|1|SA|G|471
9BUP|1|SA|U|472
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S9
- Chain SQ
- 40S ribosomal protein S23
Coloring options: