J3_9BUP_029
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|SA|U|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_029 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.0926
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|U|640
9BUP|1|SA|G|641
9BUP|1|SA|A|642
*
9BUP|1|SA|U|929
9BUP|1|SA|A|930
9BUP|1|SA|A|931
9BUP|1|SA|U|932
9BUP|1|SA|A|933
9BUP|1|SA|G|934
*
9BUP|1|SA|C|1031
9BUP|1|SA|A|1032
9BUP|1|SA|U|1033
9BUP|1|SA|U|1034
9BUP|1|SA|A|1035
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S4
- 40S ribosomal protein S27
- Chain SJ
- 40S ribosomal protein S7
- Chain SK
- 40S ribosomal protein S15A
- Chain SQ
- 40S ribosomal protein S23
- Chain SU
- 40S ribosomal protein S15
- Chain SV
- 40S ribosomal protein S11
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