J3_9BUP_032

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUA*UUAUG*CAAAG

Length

13 nucleotides

Bulged bases

9BUP|1|SA|U|1183, 9BUP|1|SA|A|1194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|SA|C|1106
9BUP|1|SA|U|1107
9BUP|1|SA|A|1108
*
9BUP|1|SA|U|1180
9BUP|1|SA|U|1181
9BUP|1|SA|A|1182
9BUP|1|SA|U|1183
9BUP|1|SA|G|1184
*
9BUP|1|SA|C|1191
9BUP|1|SA|A|1192
9BUP|1|SA|A|1193
9BUP|1|SA|A|1194
9BUP|1|SA|G|1195

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S3

40S ribosomal protein S26

Chain SC

40S ribosomal protein SA

Chain SG

40S ribosomal protein S5

Chain SK

40S ribosomal protein S15A

Chain SZ

40S ribosomal protein S21