J3_9BUP_033
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAGG*CUAGUAA*UGACUACG
- Length
- 20 nucleotides
- Bulged bases
- 9BUP|1|SA|C|1912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|SA|C|1262
9BUP|1|SA|C|1263
9BUP|1|SA|A|1264
9BUP|1|SA|G|1265
9BUP|1|SA|G|1266
*
9BUP|1|SA|C|1878
9BUP|1|SA|U|1879
9BUP|1|SA|A|1880
9BUP|1|SA|G|1881
9BUP|1|SA|U|1882
9BUP|1|SA|A|1883
9BUP|1|SA|A|1884
*
9BUP|1|SA|U|1906
9BUP|1|SA|G|1907
9BUP|1|SA|A|1908
9BUP|1|SA|C|1909
9BUP|1|SA|U|1910
9BUP|1|SA|A|1911
9BUP|1|SA|C|1912
9BUP|1|SA|G|1913
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S5
- 40S ribosomal protein S28e
- Chain S7
- Transfer RNA; tRNA
- Chain SI
- 40S ribosomal protein S5
- Chain SM
- 40S ribosomal protein S16
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