J3_9BUP_040
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAC*GAACAU*AGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 9BUP|1|SA|A|1636, 9BUP|1|SA|U|1659, 9BUP|1|SA|U|1660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_040 not in the Motif Atlas
- Homologous match to J3_8CRE_085
- Geometric discrepancy: 0.378
- The information below is about J3_8CRE_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|A|1438
9BUP|1|SA|A|1439
9BUP|1|SA|C|1440
*
9BUP|1|SA|G|1632
9BUP|1|SA|A|1633
9BUP|1|SA|A|1634
9BUP|1|SA|C|1635
9BUP|1|SA|A|1636
9BUP|1|SA|U|1637
*
9BUP|1|SA|A|1653
9BUP|1|SA|G|1654
9BUP|1|SA|G|1655
9BUP|1|SA|A|1656
9BUP|1|SA|A|1657
9BUP|1|SA|G|1658
9BUP|1|SA|U|1659
9BUP|1|SA|U|1660
9BUP|1|SA|U|1661
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SI
- 40S ribosomal protein S5
- Chain SM
- 40S ribosomal protein S16
- Chain ST
- 40S ribosomal protein S29
- Chain SW
- 40S ribosomal protein S17
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