J3_9C3H_003
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CUCG*CGAUAGUCAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9C3H|1|L1|C|23, 9C3H|1|L5|U|354, 9C3H|1|L5|A|362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_003 not in the Motif Atlas
- Geometric match to J3_5TBW_061
- Geometric discrepancy: 0.0502
- The information below is about J3_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
9C3H|1|L1|C|21
9C3H|1|L1|U|22
9C3H|1|L1|C|23
9C3H|1|L1|G|24
*
9C3H|1|L5|C|351
9C3H|1|L5|G|352
9C3H|1|L5|A|353
9C3H|1|L5|U|354
9C3H|1|L5|A|355
9C3H|1|L5|G|356
9C3H|1|L5|U|357
9C3H|1|L5|C|358
9C3H|1|L5|A|359
9C3H|1|L5|A|360
9C3H|1|L5|C|361
9C3H|1|L5|A|362
9C3H|1|L5|A|363
9C3H|1|L5|G|364
9C3H|1|L5|U|365
9C3H|1|L5|A|366
9C3H|1|L5|C|367
*
9C3H|1|L5|G|374
9C3H|1|L5|G|375
9C3H|1|L5|A|376
9C3H|1|L5|A|377
9C3H|1|L5|A|378
9C3H|1|L5|G|379
Current chains
- Chain L1
- 5.8S rRNA
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LE
- Large ribosomal subunit protein uL24
- Chain LP
- Large ribosomal subunit protein eL37
- Chain LU
- Large ribosomal subunit protein eL39
- Chain NC
- Nascent chain
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