J3_9C3H_008

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9C3H|1|L5|G|959, 9C3H|1|L5|C|962, 9C3H|1|L5|G|965, 9C3H|1|L5|C|967, 9C3H|1|L5|C|968, 9C3H|1|L5|C|969, 9C3H|1|L5|U|971, 9C3H|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|C|712
9C3H|1|L5|C|713
*
9C3H|1|L5|G|955
9C3H|1|L5|A|956
9C3H|1|L5|G|957
9C3H|1|L5|G|958
9C3H|1|L5|G|959
9C3H|1|L5|A|960
9C3H|1|L5|G|961
9C3H|1|L5|C|962
9C3H|1|L5|G|963
9C3H|1|L5|A|964
9C3H|1|L5|G|965
9C3H|1|L5|A|966
9C3H|1|L5|C|967
9C3H|1|L5|C|968
9C3H|1|L5|C|969
9C3H|1|L5|G|970
9C3H|1|L5|U|971
9C3H|1|L5|C|972
9C3H|1|L5|G|973
9C3H|1|L5|C|974
9C3H|1|L5|C|975
9C3H|1|L5|G|976
*
9C3H|1|L5|C|1278
9C3H|1|L5|A|1279
9C3H|1|L5|C|1280
9C3H|1|L5|G|1281
9C3H|1|L5|G|1282
9C3H|1|L5|G|1283
9C3H|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LF

Large ribosomal subunit protein uL30

Chain LI

Large ribosomal subunit protein eL32

Chain LK

Large ribosomal subunit protein eL6