J3_9C3H_020
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9C3H|1|L5|C|4116, 9C3H|1|L5|U|4117, 9C3H|1|L5|U|4118, 9C3H|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_020 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2851
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
9C3H|1|L5|G|4091
9C3H|1|L5|G|4092
9C3H|1|L5|G|4093
9C3H|1|L5|G|4094
*
9C3H|1|L5|C|4114
9C3H|1|L5|G|4115
9C3H|1|L5|C|4116
9C3H|1|L5|U|4117
9C3H|1|L5|U|4118
9C3H|1|L5|C|4119
9C3H|1|L5|U|4120
9C3H|1|L5|G|4121
9C3H|1|L5|G|4122
9C3H|1|L5|C|4123
9C3H|1|L5|G|4124
9C3H|1|L5|C|4125
9C3H|1|L5|C|4126
9C3H|1|L5|A|4127
9C3H|1|L5|A|4128
9C3H|1|L5|G|4129
*
9C3H|1|L5|C|4155
9C3H|1|L5|G|4156
9C3H|1|L5|A|4157
9C3H|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LZ
- Large ribosomal subunit protein eL27
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Ln
- Large ribosomal subunit protein uL23
- Chain Lp
- Large ribosomal subunit protein eL43
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