J3_9C3H_025

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9C3H|1|L5|U|4989, 9C3H|1|L5|C|4990

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|C|4970
9C3H|1|L5|A|4971
9C3H|1|L5|PSU|4972
*
9C3H|1|L5|G|4986
9C3H|1|L5|C|4987
9C3H|1|L5|U|4988
9C3H|1|L5|U|4989
9C3H|1|L5|C|4990
9C3H|1|L5|U|4991
*
9C3H|1|L5|A|5060
9C3H|1|L5|A|5061
9C3H|1|L5|G|5062
9C3H|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Ld

Large ribosomal subunit protein eL31

Chain Lh

Large ribosomal subunit protein uL22