J3_9C3H_036
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9C3H|1|S2|G|1256, 9C3H|1|S2|A|1258, 9C3H|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_036 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0663
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9C3H|1|S2|C|1237
9C3H|1|S2|PSU|1238
9C3H|1|S2|U|1239
9C3H|1|S2|A|1240
9C3H|1|S2|A|1241
9C3H|1|S2|U|1242
9C3H|1|S2|U|1243
9C3H|1|S2|PSU|1244
*
9C3H|1|S2|G|1255
9C3H|1|S2|G|1256
9C3H|1|S2|G|1257
9C3H|1|S2|A|1258
9C3H|1|S2|A|1259
9C3H|1|S2|A|1260
9C3H|1|S2|C|1261
9C3H|1|S2|C|1262
9C3H|1|S2|U|1263
9C3H|1|S2|C|1264
9C3H|1|S2|A|1265
9C3H|1|S2|C|1266
*
9C3H|1|S2|G|1516
9C3H|1|S2|G|1517
9C3H|1|S2|C|1518
9C3H|1|S2|U|1519
9C3H|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain ST
- Small ribosomal subunit protein uS13
- Chain SZ
- Small ribosomal subunit protein uS10
- Chain Sf
- Small ribosomal subunit protein uS14
- Chain Sz
- Ubiquitin-40S ribosomal protein S27a
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