J3_9C6J_001

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GAG*CGAAC*GC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C6J_001 not in the Motif Atlas

Geometric match to J3_3IGI_001

Geometric discrepancy: 0.1224

The information below is about J3_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_14360.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|G|133
9C6J|1|A|A|134
9C6J|1|A|G|135
*
9C6J|1|A|C|141
9C6J|1|A|G|142
9C6J|1|A|A|143
9C6J|1|A|A|144
9C6J|1|A|C|145
*
9C6J|1|A|G|229
9C6J|1|A|C|230

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains