3D structure

PDB id
9CG6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
9CG6|1|A|U|1240, 9CG6|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9CG6_017 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1284
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03192.1
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
Number of instances in this motif group
5

Unit IDs

9CG6|1|A|C|1237
9CG6|1|A|A|1238
9CG6|1|A|A|1239
9CG6|1|A|U|1240
9CG6|1|A|G|1241
*
9CG6|1|A|C|1296
9CG6|1|A|G|1297
9CG6|1|A|U|1298
9CG6|1|A|A|1299
9CG6|1|A|G|1300
9CG6|1|A|U|1301
9CG6|1|A|C|1302
9CG6|1|A|C|1303
*
9CG6|1|A|G|1334
9CG6|1|A|U|1335
9CG6|1|A|C|1336
9CG6|1|A|G|1337

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5175 s