J3_9CG6_018

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG6_018 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0709

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|G|30
9CG6|1|a|C|31
*
9CG6|1|a|G|474
9CG6|1|a|C|475
9CG6|1|a|G|476
9CG6|1|a|A|477
9CG6|1|a|A|478
9CG6|1|a|A|479
9CG6|1|a|A|480
9CG6|1|a|G|481
*
9CG6|1|a|C|509
9CG6|1|a|C|510

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24