J3_9CL9_001

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CCAGAGCCUGAAUCAGUGUGUGUGUUAGUG*CACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUG*CAAG

Length

100 nucleotides

Bulged bases

9CL9|1|CA|U|276, 9CL9|1|CA|G|277, 9CL9|1|CA|A|294, 9CL9|1|CA|A|371, 9CL9|1|CA|G|372, 9CL9|1|CA|G|386, 9CL9|1|CA|U|387, 9CL9|1|CA|A|404, 9CL9|1|CA|U|405, 9CL9|1|CA|A|422, 9CL9|1|CA|A|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|C|268
9CL9|1|CA|C|269
9CL9|1|CA|A|270
9CL9|1|CA|G|271
9CL9|1|CA|A|272
9CL9|1|CA|G|273
9CL9|1|CA|C|274
9CL9|1|CA|C|275
9CL9|1|CA|U|276
9CL9|1|CA|G|277
9CL9|1|CA|A|278
9CL9|1|CA|A|279
9CL9|1|CA|U|280
9CL9|1|CA|C|281
9CL9|1|CA|A|282
9CL9|1|CA|G|283
9CL9|1|CA|U|284
9CL9|1|CA|G|285
9CL9|1|CA|U|286
9CL9|1|CA|G|287
9CL9|1|CA|U|288
9CL9|1|CA|G|289
9CL9|1|CA|U|290
9CL9|1|CA|G|291
9CL9|1|CA|U|292
9CL9|1|CA|U|293
9CL9|1|CA|A|294
9CL9|1|CA|G|295
9CL9|1|CA|U|296
9CL9|1|CA|G|297
*
9CL9|1|CA|C|341
9CL9|1|CA|A|342
9CL9|1|CA|C|343
9CL9|1|CA|A|344
9CL9|1|CA|A|345
9CL9|1|CA|A|346
9CL9|1|CA|A|347
9CL9|1|CA|A|348
9CL9|1|CA|U|349
9CL9|1|CA|G|350
9CL9|1|CA|C|351
9CL9|1|CA|A|352
9CL9|1|CA|C|353
9CL9|1|CA|A|354
9CL9|1|CA|U|355
9CL9|1|CA|G|356
9CL9|1|CA|C|357
9CL9|1|CA|U|358
9CL9|1|CA|G|359
9CL9|1|CA|U|360
9CL9|1|CA|G|361
9CL9|1|CA|A|362
9CL9|1|CA|G|363
9CL9|1|CA|C|364
9CL9|1|CA|U|365
9CL9|1|CA|C|366
9CL9|1|CA|G|367
9CL9|1|CA|A|368
9CL9|1|CA|U|369
9CL9|1|CA|G|370
9CL9|1|CA|A|371
9CL9|1|CA|G|372
9CL9|1|CA|U|373
9CL9|1|CA|A|374
9CL9|1|CA|G|375
9CL9|1|CA|G|376
9CL9|1|CA|G|377
9CL9|1|CA|C|378
9CL9|1|CA|G|379
9CL9|1|CA|G|380
9CL9|1|CA|G|381
9CL9|1|CA|A|382
9CL9|1|CA|C|383
9CL9|1|CA|A|384
9CL9|1|CA|C|385
9CL9|1|CA|G|386
9CL9|1|CA|U|387
9CL9|1|CA|G|388
9CL9|1|CA|G|389
9CL9|1|CA|U|390
9CL9|1|CA|A|391
9CL9|1|CA|U|392
9CL9|1|CA|C|393
9CL9|1|CA|C|394
9CL9|1|CA|U|395
9CL9|1|CA|G|396
9CL9|1|CA|U|397
9CL9|1|CA|C|398
9CL9|1|CA|U|399
9CL9|1|CA|G|400
9CL9|1|CA|A|401
9CL9|1|CA|A|402
9CL9|1|CA|U|403
9CL9|1|CA|A|404
9CL9|1|CA|U|405
9CL9|1|CA|G|406
*
9CL9|1|CA|C|421
9CL9|1|CA|A|422
9CL9|1|CA|A|423
9CL9|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24