J3_9CPA_003

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*CUAG

Length

29 nucleotides

Bulged bases

9CPA|1|2|A|223, 9CPA|1|2|G|274, 9CPA|1|2|C|275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|220
9CPA|1|2|A|221
9CPA|1|2|G|222
9CPA|1|2|A|223
9CPA|1|2|U|224
9CPA|1|2|C|225
9CPA|1|2|A|226
9CPA|1|2|A|227
9CPA|1|2|A|228
9CPA|1|2|A|229
9CPA|1|2|C|230
9CPA|1|2|C|231
9CPA|1|2|A|232
9CPA|1|2|A|233
9CPA|1|2|C|234
9CPA|1|2|C|235
*
9CPA|1|2|G|271
9CPA|1|2|C|272
9CPA|1|2|G|273
9CPA|1|2|G|274
9CPA|1|2|C|275
9CPA|1|2|U|276
9CPA|1|2|U|277
9CPA|1|2|U|278
9CPA|1|2|G|279
*
9CPA|1|2|C|286
9CPA|1|2|U|287
9CPA|1|2|A|288
9CPA|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

Small ribosomal subunit protein eS8

Chain N

Ribosomal protein S11