J3_9CPA_006

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9CPA|1|2|C|1134, 9CPA|1|2|A|1146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|1090
9CPA|1|2|U|1091
9CPA|1|2|G|1092
*
9CPA|1|2|U|1132
9CPA|1|2|U|1133
9CPA|1|2|C|1134
9CPA|1|2|C|1135
9CPA|1|2|G|1136
*
9CPA|1|2|C|1143
9CPA|1|2|A|1144
9CPA|1|2|A|1145
9CPA|1|2|A|1146
9CPA|1|2|G|1147

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

uS2 (SA)

Chain X

40S ribosomal protein S21

Chain Y

Ribosomal protein S15a

Chain b

40S ribosomal protein S26

Chain c

40S ribosomal protein S27