J3_9CPA_009

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9CPA|1|2|G|1252, 9CPA|1|2|A|1254

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|1233
9CPA|1|2|U|1234
9CPA|1|2|U|1235
9CPA|1|2|A|1236
9CPA|1|2|A|1237
9CPA|1|2|U|1238
9CPA|1|2|U|1239
9CPA|1|2|U|1240
*
9CPA|1|2|G|1251
9CPA|1|2|G|1252
9CPA|1|2|G|1253
9CPA|1|2|A|1254
9CPA|1|2|A|1255
9CPA|1|2|A|1256
9CPA|1|2|C|1257
9CPA|1|2|C|1258
9CPA|1|2|U|1259
9CPA|1|2|C|1260
9CPA|1|2|A|1261
9CPA|1|2|C|1262
*
9CPA|1|2|G|1511
9CPA|1|2|G|1512
9CPA|1|2|C|1513
9CPA|1|2|U|1514
9CPA|1|2|G|1515

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

uS19

Chain U

uS13

Chain W

uS10

Chain e

eS29

Chain f

Ribosomal protein S27a