J3_9CPA_013

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGGC*GGAC*GAUUG

Length

14 nucleotides

Bulged bases

9CPA|1|2|A|1472, 9CPA|1|2|U|1473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|1387
9CPA|1|2|U|1388
9CPA|1|2|G|1389
9CPA|1|2|G|1390
9CPA|1|2|C|1391
*
9CPA|1|2|G|1446
9CPA|1|2|G|1447
9CPA|1|2|A|1448
9CPA|1|2|C|1449
*
9CPA|1|2|G|1471
9CPA|1|2|A|1472
9CPA|1|2|U|1473
9CPA|1|2|U|1474
9CPA|1|2|G|1475

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain H

Small ribosomal subunit protein uS7

Chain S

uS9

Chain T

eS17

Chain W

uS10

Chain e

eS29

Chain g

RACK1