J3_9D0G_033

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0G_033 not in the Motif Atlas

Geometric match to J3_4LFB_007

Geometric discrepancy: 0.0749

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01343.1

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9D0G|1|1a|C|1063
9D0G|1|1a|G|1064
9D0G|1|1a|U|1065
9D0G|1|1a|C|1066
9D0G|1|1a|A|1067
9D0G|1|1a|G|1068
*
9D0G|1|1a|C|1107
9D0G|1|1a|G|1108
9D0G|1|1a|C|1109
9D0G|1|1a|A|1110
9D0G|1|1a|A|1111
9D0G|1|1a|C|1112
9D0G|1|1a|C|1113
*
9D0G|1|1a|G|1187
9D0G|1|1a|A|1188
9D0G|1|1a|C|1189
9D0G|1|1a|G|1190
9D0G|1|1a|A|1191
9D0G|1|1a|C|1192
9D0G|1|1a|G|1193

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1c

30S ribosomal protein S3

Chain 1e

30S ribosomal protein S5

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z