J3_9D0G_044

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9D0G|1|2A|G|686, 9D0G|1|2A|G|792, 9D0G|1|2A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0G_044 not in the Motif Atlas

Geometric match to J3_9DFE_007

Geometric discrepancy: 0.0567

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9D0G|1|2A|C|683
9D0G|1|2A|G|684
9D0G|1|2A|A|685
9D0G|1|2A|G|686
9D0G|1|2A|C|687
9D0G|1|2A|U|688
9D0G|1|2A|A|689
*
9D0G|1|2A|U|773
9D0G|1|2A|A|774
9D0G|1|2A|G|775
*
9D0G|1|2A|C|791
9D0G|1|2A|G|792
9D0G|1|2A|A|793
9D0G|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2