J3_9D0G_046

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

9D0G|1|2A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0G_046 not in the Motif Atlas

Geometric match to J3_9DFE_010

Geometric discrepancy: 0.0697

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9D0G|1|2A|C|1298
9D0G|1|2A|G|1299
9D0G|1|2A|U|1300
9D0G|1|2A|A|1301
9D0G|1|2A|A|1302
9D0G|1|2A|G|1303
*
9D0G|1|2A|C|1625
9D0G|1|2A|G|1626
9D0G|1|2A|G|1627
*
9D0G|1|2A|U|1639
9D0G|1|2A|C|1640
9D0G|1|2A|A|1641
9D0G|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains