J3_9D0I_043

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9D0I|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0I_043 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0685

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9D0I|1|2A|C|297
9D0I|1|2A|G|298
9D0I|1|2A|A|299
9D0I|1|2A|A|300
9D0I|1|2A|G|301
*
9D0I|1|2A|C|316
9D0I|1|2A|G|317
9D0I|1|2A|C|318
9D0I|1|2A|C|319
9D0I|1|2A|A|320
9D0I|1|2A|G|321
9D0I|1|2A|A|322
9D0I|1|2A|G|323
9D0I|1|2A|A|324
9D0I|1|2A|G|325
*
9D0I|1|2A|C|337
9D0I|1|2A|G|338
9D0I|1|2A|U|339
9D0I|1|2A|A|340
9D0I|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24