J3_9D0I_047

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

9D0I|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0I_047 not in the Motif Atlas

Geometric match to J3_9DFE_011

Geometric discrepancy: 0.0729

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9D0I|1|2A|C|1306
9D0I|1|2A|A|1307
9D0I|1|2A|A|1308
9D0I|1|2A|G|1309
*
9D0I|1|2A|C|1605
9D0I|1|2A|G|1606
9D0I|1|2A|C|1607
9D0I|1|2A|A|1608
9D0I|1|2A|A|1609
9D0I|1|2A|A|1610
9D0I|1|2A|C|1611
*
9D0I|1|2A|G|1620
9D0I|1|2A|U|1621
9D0I|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34