J3_9D0I_063
3D structure
- PDB id
- 9D0I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D0I_063 not in the Motif Atlas
- Geometric match to J3_8GLP_017
- Geometric discrepancy: 0.1003
- The information below is about J3_8GLP_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9D0I|1|2a|U|943
9D0I|1|2a|G|944
9D0I|1|2a|G|945
9D0I|1|2a|A|946
*
9D0I|1|2a|U|1235
9D0I|1|2a|A|1236
9D0I|1|2a|C|1237
*
9D0I|1|2a|G|1337
9D0I|1|2a|G|1338
9D0I|1|2a|A|1339
9D0I|1|2a|A|1340
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2i
- 30S ribosomal protein S9
- Chain 2m
- 30S ribosomal protein S13
- Chain 2u
- 30S ribosomal protein Thx
- Chain 2x
- Transfer RNA; tRNA
- Chain 2y
- Transfer RNA; tRNA
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