J3_9D0J_002

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

9D0J|1|1A|U|504, 9D0J|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0J_002 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0367

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9D0J|1|1A|G|30
9D0J|1|1A|C|31
*
9D0J|1|1A|G|474
9D0J|1|1A|U|475
9D0J|1|1A|G|476
9D0J|1|1A|A|477
9D0J|1|1A|A|478
9D0J|1|1A|A|479
9D0J|1|1A|A|480
9D0J|1|1A|G|481
9D0J|1|1A|A|482
9D0J|1|1A|A|483
9D0J|1|1A|C|484
*
9D0J|1|1A|G|496
9D0J|1|1A|A|497
9D0J|1|1A|G|498
9D0J|1|1A|U|499
9D0J|1|1A|G|500
9D0J|1|1A|A|501
9D0J|1|1A|A|502
9D0J|1|1A|A|503
9D0J|1|1A|U|504
9D0J|1|1A|A|505
9D0J|1|1A|G|506
9D0J|1|1A|A|507
9D0J|1|1A|G|508
9D0J|1|1A|C|509
9D0J|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24