J3_9D0J_044

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9D0J|1|2A|G|686, 9D0J|1|2A|G|792, 9D0J|1|2A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0J_044 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0494

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9D0J|1|2A|C|683
9D0J|1|2A|G|684
9D0J|1|2A|A|685
9D0J|1|2A|G|686
9D0J|1|2A|C|687
9D0J|1|2A|U|688
9D0J|1|2A|A|689
*
9D0J|1|2A|U|773
9D0J|1|2A|A|774
9D0J|1|2A|G|775
*
9D0J|1|2A|C|791
9D0J|1|2A|G|792
9D0J|1|2A|A|793
9D0J|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2