3D structure

PDB id
9D7S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.85 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D7S_008 not in the Motif Atlas
Homologous match to J3_9DFE_008
Geometric discrepancy: 0.0559
The information below is about J3_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

9D7S|1|1A|C|698
9D7S|1|1A|A|699
9D7S|1|1A|G|700
*
9D7S|1|1A|C|732
9D7S|1|1A|G|733
9D7S|1|1A|A|734
9D7S|1|1A|A|735
9D7S|1|1A|C|736
*
9D7S|1|1A|G|760
9D7S|1|1A|A|761
9D7S|1|1A|U|762
9D7S|1|1A|G|763

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2

Coloring options:


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