J3_9D7S_013

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7S_013 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0668

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9D7S|1|1A|G|1424
9D7S|1|1A|G|1425
9D7S|1|1A|G|1426
9D7S|1|1A|A|1427
9D7S|1|1A|C|1428
9D7S|1|1A|G|1429
*
9D7S|1|1A|C|1564
9D7S|1|1A|C|1565
*
9D7S|1|1A|G|1568
9D7S|1|1A|A|1569
9D7S|1|1A|A|1570
9D7S|1|1A|A|1571
9D7S|1|1A|A|1572
9D7S|1|1A|G|1573
9D7S|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2