J3_9D7T_010

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

9D7T|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7T_010 not in the Motif Atlas

Homologous match to J3_9DFE_010

Geometric discrepancy: 0.056

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9D7T|1|1A|C|1298
9D7T|1|1A|G|1299
9D7T|1|1A|U|1300
9D7T|1|1A|A|1301
9D7T|1|1A|A|1302
9D7T|1|1A|G|1303
*
9D7T|1|1A|C|1625
9D7T|1|1A|G|1626
9D7T|1|1A|G|1627
*
9D7T|1|1A|U|1639
9D7T|1|1A|C|1640
9D7T|1|1A|A|1641
9D7T|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains