J3_9D7T_044

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9D7T|1|2A|G|686, 9D7T|1|2A|G|792, 9D7T|1|2A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7T_044 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0695

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9D7T|1|2A|C|683
9D7T|1|2A|G|684
9D7T|1|2A|A|685
9D7T|1|2A|G|686
9D7T|1|2A|C|687
9D7T|1|2A|U|688
9D7T|1|2A|A|689
*
9D7T|1|2A|U|773
9D7T|1|2A|A|774
9D7T|1|2A|G|775
*
9D7T|1|2A|C|791
9D7T|1|2A|G|792
9D7T|1|2A|A|793
9D7T|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2z

Api137 Antimicrobial Peptide