3D structure

PDB id
9D7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
9D7T|1|2A|A|2518, 9D7T|1|2A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D7T_053 not in the Motif Atlas
Homologous match to J3_9DFE_017
Geometric discrepancy: 0.0675
The information below is about J3_9DFE_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9D7T|1|2A|C|2517
9D7T|1|2A|A|2518
9D7T|1|2A|U|2519
9D7T|1|2A|C|2520
*
9D7T|1|2A|G|2545
9D7T|1|2A|U|2546
9D7T|1|2A|U|2547
*
9D7T|1|2A|A|2561
9D7T|1|2A|U|2562
9D7T|1|2A|U|2563
9D7T|1|2A|A|2564
9D7T|1|2A|A|2565
9D7T|1|2A|A|2566
9D7T|1|2A|G|2567

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2N
50S ribosomal protein L13
Chain 2O
50S ribosomal protein L14

Coloring options:


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