J3_9D7T_057

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

9D7T|1|2a|C|48, 9D7T|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7T_057 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0646

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9D7T|1|2a|G|46
9D7T|1|2a|C|47
9D7T|1|2a|C|48
9D7T|1|2a|U|49
9D7T|1|2a|A|50
9D7T|1|2a|A|51
9D7T|1|2a|G|52
*
9D7T|1|2a|U|359
9D7T|1|2a|A|360
9D7T|1|2a|G|361
9D7T|1|2a|G|362
9D7T|1|2a|A|363
9D7T|1|2a|A|364
9D7T|1|2a|U|365
9D7T|1|2a|C|366
9D7T|1|2a|U|367
*
9D7T|1|2a|A|393
9D7T|1|2a|G|394
9D7T|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16