J3_9D89_006
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9D89|1|D|U|688, 9D89|1|D|A|794, 9D89|1|D|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_006 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0418
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|U|685
9D89|1|D|G|686
9D89|1|D|A|687
9D89|1|D|U|688
9D89|1|D|C|689
9D89|1|D|U|690
9D89|1|D|A|691
*
9D89|1|D|U|775
9D89|1|D|G|776
9D89|1|D|G|777
*
9D89|1|D|C|793
9D89|1|D|A|794
9D89|1|D|A|795
9D89|1|D|A|796
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain F
- 50S ribosomal protein L2
- Chain T
- Rumicidin-2 (12-27)
Coloring options: