J3_9D89_013
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9D89|1|D|A|2392, 9D89|1|D|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_013 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.5493
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9D89|1|D|G|2286
9D89|1|D|C|2287
9D89|1|D|A|2288
*
9D89|1|D|U|2388
9D89|1|D|C|2389
9D89|1|D|A|2390
9D89|1|D|U|2391
9D89|1|D|A|2392
9D89|1|D|G|2393
9D89|1|D|U|2394
9D89|1|D|G|2395
9D89|1|D|A|2396
9D89|1|D|U|2397
9D89|1|D|C|2398
9D89|1|D|C|2399
*
9D89|1|D|G|2425
9D89|1|D|C|2426
9D89|1|D|U|2427
9D89|1|D|C|2428
9D89|1|D|A|2429
9D89|1|D|A|2430
9D89|1|D|C|2431
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain B
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain L
- 50S ribosomal protein L27
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