3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
9D89|1|D|A|2392, 9D89|1|D|A|2430
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D89_013 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.5493
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

9D89|1|D|G|2286
9D89|1|D|C|2287
9D89|1|D|A|2288
*
9D89|1|D|U|2388
9D89|1|D|C|2389
9D89|1|D|A|2390
9D89|1|D|U|2391
9D89|1|D|A|2392
9D89|1|D|G|2393
9D89|1|D|U|2394
9D89|1|D|G|2395
9D89|1|D|A|2396
9D89|1|D|U|2397
9D89|1|D|C|2398
9D89|1|D|C|2399
*
9D89|1|D|G|2425
9D89|1|D|C|2426
9D89|1|D|U|2427
9D89|1|D|C|2428
9D89|1|D|A|2429
9D89|1|D|A|2430
9D89|1|D|C|2431

Current chains

Chain D
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain B
50S ribosomal protein L35
Chain I
50S ribosomal protein L15
Chain L
50S ribosomal protein L27

Coloring options:


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