J3_9D89_015

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

9D89|1|D|U|2338, 9D89|1|D|A|2340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D89_015 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.0806

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9D89|1|D|C|2299
9D89|1|D|U|2300
9D89|1|D|A|2301
9D89|1|D|A|2302
9D89|1|D|U|2303
*
9D89|1|D|A|2321
9D89|1|D|G|2322
9D89|1|D|G|2323
9D89|1|D|U|2324
9D89|1|D|U|2325
9D89|1|D|A|2326
9D89|1|D|G|2327
*
9D89|1|D|C|2336
9D89|1|D|A|2337
9D89|1|D|U|2338
9D89|1|D|A|2339
9D89|1|D|A|2340
9D89|1|D|G|2341

Current chains

Chain D

23S rRNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L27

Chain f

50S ribosomal protein L5

Chain n

50S ribosomal protein L18