J3_9D89_016

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9D89|1|D|A|2522, 9D89|1|D|U|2523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D89_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0451

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9D89|1|D|C|2521
9D89|1|D|A|2522
9D89|1|D|U|2523
9D89|1|D|C|2524
*
9D89|1|D|G|2549
9D89|1|D|U|2550
9D89|1|D|A|2551
*
9D89|1|D|U|2565
9D89|1|D|U|2566
9D89|1|D|U|2567
9D89|1|D|A|2568
9D89|1|D|A|2569
9D89|1|D|A|2570
9D89|1|D|G|2571

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain j

50S ribosomal protein L14