J3_9DFC_006

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9DFC|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_006 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0549

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9DFC|1|1A|C|297
9DFC|1|1A|G|298
9DFC|1|1A|A|299
9DFC|1|1A|A|300
9DFC|1|1A|G|301
*
9DFC|1|1A|C|316
9DFC|1|1A|G|317
9DFC|1|1A|C|318
9DFC|1|1A|C|319
9DFC|1|1A|A|320
9DFC|1|1A|G|321
9DFC|1|1A|A|322
9DFC|1|1A|G|323
9DFC|1|1A|A|324
9DFC|1|1A|G|325
*
9DFC|1|1A|C|337
9DFC|1|1A|G|338
9DFC|1|1A|U|339
9DFC|1|1A|A|340
9DFC|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24