J3_9DFC_010

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

9DFC|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_010 not in the Motif Atlas

Homologous match to J3_9DFE_010

Geometric discrepancy: 0.0547

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9DFC|1|1A|C|1298
9DFC|1|1A|G|1299
9DFC|1|1A|U|1300
9DFC|1|1A|A|1301
9DFC|1|1A|A|1302
9DFC|1|1A|G|1303
*
9DFC|1|1A|C|1625
9DFC|1|1A|G|1626
9DFC|1|1A|G|1627
*
9DFC|1|1A|U|1639
9DFC|1|1A|C|1640
9DFC|1|1A|A|1641
9DFC|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains