J3_9DFC_017

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9DFC|1|1A|A|2518, 9DFC|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_017 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0556

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9DFC|1|1A|C|2517
9DFC|1|1A|A|2518
9DFC|1|1A|U|2519
9DFC|1|1A|C|2520
*
9DFC|1|1A|G|2545
9DFC|1|1A|U|2546
9DFC|1|1A|U|2547
*
9DFC|1|1A|A|2561
9DFC|1|1A|U|2562
9DFC|1|1A|U|2563
9DFC|1|1A|A|2564
9DFC|1|1A|A|2565
9DFC|1|1A|A|2566
9DFC|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14