J3_9DFC_044

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9DFC|1|2A|G|686, 9DFC|1|2A|G|792, 9DFC|1|2A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_044 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.052

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9DFC|1|2A|C|683
9DFC|1|2A|G|684
9DFC|1|2A|A|685
9DFC|1|2A|G|686
9DFC|1|2A|C|687
9DFC|1|2A|U|688
9DFC|1|2A|A|689
*
9DFC|1|2A|U|773
9DFC|1|2A|A|774
9DFC|1|2A|G|775
*
9DFC|1|2A|C|791
9DFC|1|2A|G|792
9DFC|1|2A|A|793
9DFC|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2