J3_9DFC_047

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

9DFC|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_047 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.0652

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9DFC|1|2A|C|1306
9DFC|1|2A|A|1307
9DFC|1|2A|A|1308
9DFC|1|2A|G|1309
*
9DFC|1|2A|C|1605
9DFC|1|2A|G|1606
9DFC|1|2A|C|1607
9DFC|1|2A|A|1608
9DFC|1|2A|A|1609
9DFC|1|2A|A|1610
9DFC|1|2A|C|1611
*
9DFC|1|2A|G|1620
9DFC|1|2A|U|1621
9DFC|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34