J3_9DFC_050

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9DFC|1|2A|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFC_050 not in the Motif Atlas

Homologous match to J3_9DFE_014

Geometric discrepancy: 0.0663

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9DFC|1|2A|U|2091
9DFC|1|2A|U|2092
9DFC|1|2A|G|2093
*
9DFC|1|2A|C|2196
9DFC|1|2A|U|2197
9DFC|1|2A|A|2198
9DFC|1|2A|A|2199
9DFC|1|2A|C|2200
*
9DFC|1|2A|G|2223
9DFC|1|2A|G|2224
9DFC|1|2A|A|2225
9DFC|1|2A|C|2226
9DFC|1|2A|A|2227
9DFC|1|2A|G|2228

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9