3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
9DFC|1|2A|A|2198
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9DFC_050 not in the Motif Atlas
Homologous match to J3_9DFE_014
Geometric discrepancy: 0.0663
The information below is about J3_9DFE_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

9DFC|1|2A|U|2091
9DFC|1|2A|U|2092
9DFC|1|2A|G|2093
*
9DFC|1|2A|C|2196
9DFC|1|2A|U|2197
9DFC|1|2A|A|2198
9DFC|1|2A|A|2199
9DFC|1|2A|C|2200
*
9DFC|1|2A|G|2223
9DFC|1|2A|G|2224
9DFC|1|2A|A|2225
9DFC|1|2A|C|2226
9DFC|1|2A|A|2227
9DFC|1|2A|G|2228

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2D
50S ribosomal protein L2
Chain 2I
50S ribosomal protein L9

Coloring options:


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