J3_9DFD_017

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9DFD|1|1A|A|2518, 9DFD|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFD_017 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0632

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9DFD|1|1A|C|2517
9DFD|1|1A|A|2518
9DFD|1|1A|U|2519
9DFD|1|1A|C|2520
*
9DFD|1|1A|G|2545
9DFD|1|1A|U|2546
9DFD|1|1A|U|2547
*
9DFD|1|1A|A|2561
9DFD|1|1A|U|2562
9DFD|1|1A|U|2563
9DFD|1|1A|A|2564
9DFD|1|1A|A|2565
9DFD|1|1A|A|2566
9DFD|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14