J3_9DFE_057

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

9DFE|1|2a|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFE_057 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.0938

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9DFE|1|2a|C|586
9DFE|1|2a|G|587
9DFE|1|2a|G|588
*
9DFE|1|2a|C|651
9DFE|1|2a|U|652
9DFE|1|2a|A|653
9DFE|1|2a|G|654
*
9DFE|1|2a|C|754
9DFE|1|2a|G|755

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17