J3_9DFE_063

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9DFE|1|2a|A|975, 9DFE|1|2a|G|976, 9DFE|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFE_063 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0677

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9DFE|1|2a|U|955
9DFE|1|2a|U|956
9DFE|1|2a|U|957
9DFE|1|2a|A|958
9DFE|1|2a|A|959
9DFE|1|2a|U|960
9DFE|1|2a|U|961
9DFE|1|2a|C|962
*
9DFE|1|2a|G|973
9DFE|1|2a|A|974
9DFE|1|2a|A|975
9DFE|1|2a|G|976
9DFE|1|2a|A|977
9DFE|1|2a|A|978
9DFE|1|2a|C|979
9DFE|1|2a|C|980
9DFE|1|2a|U|981
9DFE|1|2a|U|982
9DFE|1|2a|A|983
9DFE|1|2a|C|984
*
9DFE|1|2a|G|1221
9DFE|1|2a|G|1222
9DFE|1|2a|C|1223
9DFE|1|2a|G|1224
9DFE|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A

Chain 2z

Lasso peptide lariocidin